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Scientific Resource Compendium

The value of science not only hinges upon its quality but how well it is disseminated. The Scientific Resource Compendium here at Ocimum aims at providing a forum where we could promote and foster knowledge about a variety of community topics in life-sciences.

That great site you never knew....That wonderful paper you missed out on....That lab protocol you wished you knew...That amazing Scientist whose work inspires you...

You will find all this and more as we build upon this concept with you.

What's new with life-sciences
Latest from PLOS Blogs:
  1. To screen or not to screen?

    To screen or not to screen? One of the more “interesting” experiences of my journalistic career was co-authoring an Op-Ed for the San Francisco Chronicle in 2002 on the lack of evidence for prostate cancer screening using the PSA test.

    The piece caused quite a reaction, which we later discussed in the BMJ:

    “Within hours of our piece being published, prostate cancer charities, support groups, and urologists around the country had circulated a "Special Alert" by e-mail. This community has huge faith in PSA tests, and it did not care for our opinion. The e-mail, under the header "ATTENTION MEN!!" urged the community to take action. By the end of the day, accusations, abuse, and personal threats jammed our e-mail inboxes. We were compared to Josef Mengele, and accused of having the future deaths of hundreds of thousands of men on our hands.”

    I suspect that this same community will now be up in arms about the latest guidance from the US Preventive Services Task Force (USPSTF), one of the best respected independent health agencies in the country.

    As the New York Times reports in a huge cover story today, headlined Panel Urges End to Prostate Screening at Age 75, the task force has systematically reviewed the best evidence on the value of such screening and concludes:

    “The USPSTF recommends against screening for prostate cancer in men age 75 years or older.”

    It also concludes that “the current evidence is insufficient to assess the balance of benefits and harms of prostate cancer screening in men younger than age 75 years.”

    The New York Times notes that the new guidance, which now clearly advises against screening men aged 75 and older, represents "an abrupt policy change by an influential panel," a panel that had previously withheld giving specific advice regarding screening for prostate cancer.

    In a terrific NPR commentary today on the new guidance, Doug Kamerow says:

    “There just aren't any good studies to show that men who get screened and treated for prostate cancer live longer than those who don't. So the benefits are unknown. But the harms of screening and treatment are real and well documented. They include not just the costs and pain of treatment, but also the incontinence and impotence that some men get after surgery. The problem is that some prostate cancer grows quickly and is lethal. Some, especially in older men, is slow-growing and never causes a problem. That is why people say that more older men die with prostate cancer than of prostate cancer.”

    I suspect that despite the new USPSTF guidance, the “great prostate debate” is far from over. It is merely, says NBC news’ chief science correspondent Robert Bazell, “the latest shot in an ongoing war among many factions who hold various positions on this disease.”

    Hopefully the war will be settled when we have the results of two ongoing clinical trials of prostate cancer screening, one in the U.S. and one in Europe.

    Trackback URL for this post:

    http://www.plos.org/cms/trackback/390
  2. ONE journal, two birthdays

    The English Monarch has two birthdays – their real date of birth is celebrated in private with family and friends and the official date (which could historically be moved should their real birthday fall at a time of year when the weather was inclement) which is celebrated in public through the Trooping of the Colour Ceremony and a fly-past over Buckingham Palace in London.

    PLoS ONE also celebrates twice (but far less grandly) – first there’s the date we opened our doors for submissions, 4 August 2006 (the date of our conception) and then there’s the date we launched (our birth), 20th December 2006.

    Within less than 3 weeks of opening our doors we had received 70 manuscripts which represented far more papers flowing far faster than we’d ever experienced before. Now, two years later, we receive approximately 350 submissions per month. Not surprisingly, the PLoS team has grown since then to cope with the increased workload.

    Two folks who deserve special mention for being there at the start and still being on board now - they are Bex Walton and Lindsay King.

    Two years on, the person who still sums up our publishing philosophy well is the author of the first paper accepted for PLoS ONE, Andrej Romanovsky of St. Joseph's Hospital, Phoenix, Arizona, USA. He said "A traditional publisher uses complex rules to determine who, when, how, and at what price will be allowed to see your results. You can continue supporting this system ... or you can submit your next paper to PLoS”.

    Trackback URL for this post:

    http://www.plos.org/cms/trackback/389
    from A Blog Around The Clock on Mon, 2008-08-04 04:55

    Two years ago on this day, PLoS ONE opened for submissions (and surprisingly many manuscripts - 70 - got submitted immediatelly)....


Latest from Genome Biology:
  1. DNA replication can still spring surprises
    A report of the first EMBO conference in a biennial series 'Replication and Segregation of Chromosomes', Geilo, Norway, 16-20 June 2008.
  2. Correction: Statistical modeling for selecting housekeeper genes
    A correction to Statistical modeling for selecting housekeeper genes by Aniko Szabo, Charles M Perou, Mehmet Karaca, Laurent Perreard, John F Quackenbush, and Philip S Bernard. Genome Biology 2004, 5:R59






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OciPicks on Quality Research
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Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome. EMBO Reports. 2006 Jul; 7(7):710-5. Epub 2006 Jun 16.

The authors demonstrate using a DNA-microarray-based approach that genomic transcription is tightly associated with the spacial distribution of supercoiling sensitivity.

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Mammalian cell survival and processing in supercritical CO2. Proc Natl Acad Sci U S A. 2006 May 9;103(19):7426-31. Epub 2006 May 1.

The authors show that mammalian cells can survive for 5 min within high-pressure CO2.

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From sequences to a functional unit. Physiol Genomics. 2006 Mar 13;25(1):1-8. Epub 2006 Jan 3.

The authors suggest that atleast 10% of genes from complete genomes existing in fused form, identifying gene fusion events helps us categorize the protein universe into distinct functional units with only sequence information.

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